rs28068631 SNP Detail

Summary

• ID
  rs28068631
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81481996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCAGTG GAGCCAGAGC
  ATCCACGCAG CAAGCTCAGG CCACTCTGCT CCTTCCTCTG TCAGTAGGAA ACGCTTGCTT
  TGCCTTCTGG TGCCTTCACA CCAACATTCC TGACTCTCTC ACACCCGCCT CTCGTGTAAA
  GCTTGTCAGG TCTCACTTGG TGAAGTGAGT GAGACTGGAG AACATCAGAA TGTGCTGTTC
  M
  GGAGTTCTGC TTCAGAGCAG GGAGCCAGGC TGCATAAAAA TGTGGCCAAC GCTGCAGTGC
  GTGGGGGGAT TTAAGGCAGC GGCAGCACTC ACGGAGTGAG ACCAATGAGA TTCATTGCAG
  GTGTAGACCG TGGCAGTCTC CACGAAGTCT GGAGCAAGGG CTTTGGCAGG AACATATTTT
  TTATTTTATT TTTCAGTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38230557	NES09591673	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28068631					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38230557	NES09591673	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81481996 () rs orientation: forward

Symbol	Name	Function Class
Rr594237	regulatory region 594237	1869 bp distal
Rr594238	regulatory region 594238	within coordinates
Rr594239	regulatory region 594239	487 bp proximal
Rr594240	regulatory region 594240	764 bp proximal