rs28068629 SNP Detail

Summary

• ID
  rs28068629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81482598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCCATTA AGACTTCTCA
  GTTTTCGGAA TCCAAGTTTC ATATTTGTGC CTGGTGGTAG TAAATGCGAA TGTTAACCCA
  ACCCTAATTG TTTTTTAGCT TTTGCCCTGA CTGTAATAAA GGCTCCCAGG CTAGGAAATG
  GTTCACAATT TGTTAGTGGA ACAGGAAATT TTTATTGGTA GTGGAGCATC CACATGACTG
  Y
  TGATTTCTAT TTATAAAATT CTTCGCATTT TTCCTTCAGG TTTACCAAGG GATTTGGTAT
  TTTCTAAGAC ATTTAATTTG GTGTCTGGGT GCTTCGCTAA GTAAATAAAC AGAAATTTTC
  TTTCTGTTGC TAGACAAAAA AAAAAAAAAA GTTTTCTTTT AGAAGTCAGT AGAGGGCGCT
  GTTGGCATTT GATTTGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38230555	NES09591675	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28068629					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38230555	NES09591675	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81482598 () rs orientation: forward

Symbol	Name	Function Class
Rr594238	regulatory region 594238	469 bp distal
Rr594239	regulatory region 594239	within coordinates
Rr594240	regulatory region 594240	162 bp proximal
Rr594241	regulatory region 594241	1667 bp proximal