rs28068622 SNP Detail

Summary

• ID
  rs28068622
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81484022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGAAGGC TCCTTCCCTG
  GGTTGCACAA AACAGGGCAT GCAGTTGATC GTGTTTCTGA GTATACAAAG AAGTGCTACT
  TTCTGGGGAC AGTAAAACAC ATTGCATTTT GCAAACAAAA CATCAAGCCA AAGGCATGTC
  ACTGTTCACA AAACACATGG AACTTGTTGG AAGGCAAAGG GAAAGAGATC GTTGGCGTTT
  W
  AGTGGAAAGG TAGAAAAGAA CTATGATATC ATCAGGCAGC ATCGGGTTCT CTCCGATCGT
  TTACACTCTT TAGTGTGTCA GGGTTGGTCT GTGCTTGTGT TGATTTCCGG CCTTCCAATC
  GAGATTAGTT TTACTTTTCA TTCTCATAGG AAAAGCGTGA CTCTGTCGTT CAGGTAGAAT
  CGAAAAACAA ATAGAAATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38230548	NES09591682	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28068622					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38230548	NES09591682	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81484022 () rs orientation: forward

Symbol	Name	Function Class
Gm69809	predicted gene, 69809	733 bp upstream
Rr594238	regulatory region 594238	1893 bp distal
Rr594239	regulatory region 594239	873 bp distal
Rr594240	regulatory region 594240	1241 bp distal
Rr594241	regulatory region 594241	243 bp proximal