rs28068618 SNP Detail

Summary

• ID
  rs28068618
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:81484297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCAGGGT TGGTCTGTGC
  TTGTGTTGAT TTCCGGCCTT CCAATCGAGA TTAGTTTTAC TTTTCATTCT CATAGGAAAA
  GCGTGACTCT GTCGTTCAGG TAGAATCGAA AAACAAATAG AAATGCTTTG TGGTTCTTAA
  ATGATCTAGA TAGCTGGGCA AAAAGGCCCA GTACTATTGC AAGTATAATT TTAGGTGAAA
  W
  TTTTGTTCCA TGTGAAGCAT TAATTTTAAT AGAGACTTAT ATATAAATGC TCATTTGAAT
  AATAATGTAA AATTAAATTT AAATTGTAAA TACCGTCCAG TACTAGCTGT TTTCTGGCTC
  GAATTCTTCA GCACATATGG TGCTAGCATA AGCTTGTGCC TGTCTGCCTA CTCTGGGTAA
  TTTTGCATGC AAATAGTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38230544	NES09591686	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28068618					SNP	A	T	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38230544	NES09591686	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:81484297 () rs orientation: forward

Symbol	Name	Function Class
Gm69809	predicted gene, 69809	458 bp upstream
Rr594239	regulatory region 594239	1148 bp distal
Rr594240	regulatory region 594240	1516 bp distal
Rr594241	regulatory region 594241	within coordinates