rs28062466 SNP Detail

Summary

• ID
  rs28062466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:72479431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAACAGCT GGAAGGTGGA CAGAGGGAGG GGCAATAAAA
  TATGGAGTAT AAAAAATTAA TTAATTAATT AATTAATTAA AAAGAAATTA GTCTCAAACT
  R
  GATGTTCACC CAGAAGCTCT ATAACATCCA TATTTTTTTG TTTCAAAATT CAACAGGTCT
  GGTTTGGGGC CTGAAAAAAT TTTATTTATT ATAATTTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss38190298	NES09619156	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A			A		G	A	G
ss45687873	mCV24442041	ABI	CRAMUS_MOUSE	f	SNP			A					A	G
ss146541862	ENSMUSSNP1375427	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss321163029	CHEV_4_72222228	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs28062466					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190298	NES09619156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:72479431 () rs orientation: forward

Symbol	Name	Function Class
Rr593970	regulatory region 593970	1697 bp proximal