rs28062463 SNP Detail

Summary

• ID
  rs28062463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:72480837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTATTAG CAGACCAAAC
  ATTGCCAAGA TGATGGGACT GAGAAGCCAT GAAATAGCAG GTTGTGTGGG ATTCCTCAGG
  AAGCCATATC ACCAACCTCA CTTCCGTTTC ATGCTGTTCT CACTTTCACT CTACCTAGGC
  CCTCTTTTCT GAGTATCACT GAAGTTACTT GAGCTTATTA CTGTTACTGG GTGTTGGACG
  Y
  TCTTCAAAAG GAATGATGAG AACATGGCTG GGTCTTACTA AAGGGGAGCA CTTGATGCCA
  GCAACCCAAA CTACTCCTAC CTCACACAGT AAAAAAAGAT GATGGACTTG TCTGTAAGAA
  GGCTTAGAGG ACATTGCATT CTTTTTCTTT CTCTACAAAT AAGAATTGAC TTTTTAAGGT
  GTTTGCAGAA TTAAGACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38190295	NES09619134	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C			C	C	C	C	C	C
ss45664729	mCV24442032	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	C
ss146541874	ENSMUSSNP3070995	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28062463					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190295	NES09619134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:72480837 () rs orientation: forward

Symbol	Name	Function Class
Rr593970	regulatory region 593970	291 bp proximal