rs28062460 SNP Detail

Summary

• ID
  rs28062460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:72481427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTGCTG CACAGAAACA
  GCTGTAGTCA GAATAAGATT AGAACAGAGG GATGCTTGTT GTATGCATAT GCTCTTGAAC
  AAGCCTCTGA AGTACTCGGC TGCTATGCTT CTCAGGAGGC CTCATTCACT GACACTTACT
  ACATATGAAG TTGACATTTC CCTTTGCTCC TCTTGAACTG TCTGTCTGTT ATCAAAAAGA
  R
  AATGAAGTAC CAACTCTGTA TGTTTACATG GAATTGGGGA ATCCTCAAAA GAGCCCATTG
  AGATGGAATT TGTTACAGGC TGTTTTACAG AAGAGAGAAA ACAAAAGGGG GGGAGGAAAA
  AAATTAAAAT AGGATTTTGT GGCTTTTGGC ACTGTTGATA ATTTGTGTGG AAAATAATGT
  TTTCCTGTGT GTTTAATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38190292	NES09619137	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G			G	G	G	G
ss45725818	mCV24442016	ABI	CRAMUS_MOUSE	f	SNP	A	G					G	G
ss146541888	ENSMUSSNP2593438	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28062460					SNP	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190292	NES09619137	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:72481427 () rs orientation: forward

Symbol	Name	Function Class
Rr593970	regulatory region 593970	within coordinates