rs28062455 SNP Detail

Summary

• ID
  rs28062455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:72482403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGAATGA AAGAAGGAAA GGCAGCTTCT TAGAGCTCCT
  GGGTGTTTAC AGAAAGCTGT GGCTGTAGTG TTGACAGGTT TTAAATCCCT GAGTGAAGAA
  Y
  CAAAGTTTAG CTCCTGAATT CACCACCTTC ATGAGCCTTG TAAAGGTAAA GTCAGTGAGG
  ACACTTCACT GTAGATTTCC ATTGCTGCAC CATTGCAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38190287	NES09619142	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		C		C	C		T	C	T		C
ss45673827	mCV24442007	ABI	CRAMUS_MOUSE	f	SNP	C					C		T
ss146541900	ENSMUSSNP6165645	ENSEMBL	ENSEMBL_Sanger	f	SNP	C							T
ss321163035	CHEV_4_72225200	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28062455					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190287	NES09619142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:72482403 () rs orientation: forward

Symbol	Name	Function Class
Rr593970	regulatory region 593970	528 bp distal