rs28062451 SNP Detail

Summary

• ID
  rs28062451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:72483285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAGTTGT CTAAAGAGCT
  TTGTAAGGTT AATTACATAA GTTATTATCA ACGAGAGCCA TTGTACAGTT AACTAAAGTA
  TTAACACTCC CATACTTTCT AGAAAATTGT GTCACAGAAA CAAGGAATCT AAAAGAAATG
  AGCAAAGGAA AAAAATCAAT TTGAATGGTG AAATAGGAAT GAGCAGATTA TGGGACTGGT
  Y
  AGACTTCAGA GACACATAGA GTTTCCTAAC CAGACAGAAA ACTTGGTGTT GCTGAGTTTT
  TGAGAAGATA TGGAAAAGAA TAAAACTCAG GCATATTTCA CAGTTTTCCC AAAGCTAATC
  CCATTGCATT GTAGTACCAA GAAGCATTTG TGAGCCCAAA AGACCAACCA GGAGATGATT
  CCGATGTAAT TGCATTAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38190283	NES09619146	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28062451					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190283	NES09619146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:72483285 () rs orientation: forward

Symbol	Name	Function Class
Rr593970	regulatory region 593970	1410 bp distal