rs28059990 SNP Detail

Summary

• ID
  rs28059990
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76352773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACAACT CATATAAACA
  AATATCGTAG TGAGACATAA ACAGTGTCTT TCTGAAAAAA TAACTATGCC CACCCTTCAA
  ACTGAAACTC AGATAATTAA AGAGGAAAAT GATTCAGTGC CCTTTTATTT AACGAACTTA
  GCAACACTGT GTCAGGAAAG CCAAGAGTAT AGTCCATTCT TTGATCCTGC CTACCCCTTC
  K
  GCAGCACAGG AAAGAAGAAC AAAGAAAGAG CTGGGCCATG TATGACTTGC TGGATCTCTA
  TAATGGAAAG TTCTACAGTC CTTCCTACAA CATTAAGTTT AAGTTATATA TCACGCCCTG
  GAACATCATA AGCAATGCCT GCATTATGAT GGGGATGAGG GGATGGGCTA TTAAATCTTG
  CTGGGGTGAA AATGTGTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38194224	NES09608411	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28059990					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38194224	NES09608411	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76352773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594098	regulatory region 594098			1231 bp proximal
Tssr42160	transcription start site region 42160			1256 bp downstream
Tssr42161	transcription start site region 42161			1327 bp downstream