rs28059986 SNP Detail

Summary

• ID
  rs28059986
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76353175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTATATA GCGCATAATA
  TTCTTGTAAC CATAAAGATT TAGATCTGTA ATTATAGGAA GGAGCCCGAT TTCACTCCAA
  TTACTAAGAA AGATGCTACG TAATAAAAAG CCAAGACTTG AAAAATGAGA GTTTGTAAGA
  GGTGAGTGTT CCCAAATTCT ACTGCATTCA CTGGTTGAAA ACAGAACTCC TGGTTTAACA
  M
  AACAAAACCC CATCAGGCAC ATTCCACCCA TGCAAGAATC CTTTAGGCAA TAAACACATT
  TTTTTTTTTG TAACAGAGAC ACCATTTTCT CGAATTAAAC GTCTGGCGGG ACAAAGTTAA
  CTGTTGTGAG GCAATACAAG ATTATTATAA CACACACTCA CACACACGCA CACGCACACA
  CACACACACA CACACACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38194220	NES09608423	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28059986					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38194220	NES09608423	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76353175 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594098	regulatory region 594098			829 bp proximal
Tssr42160	transcription start site region 42160			854 bp downstream
Tssr42161	transcription start site region 42161			925 bp downstream