rs28059971 SNP Detail

Summary

• ID
  rs28059971
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76354548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCGCTGA CAAAATTTAA
  AAGCACTATA ATAAAGCAAA AGGGCATCAG GAAAGCTGCC AAGCCGAAGG CTCAGAGGGT
  TCACACACCT CCCTCTGGCC CAGCTCCTCC ACCCCCTGAT ACAGCTGCTC CTCTCTGCAG
  GTGGGATTTA GGATAGCAAA CCTATCCACT TTGTATAGGC CAGCCCAACT CGCTGTCCCA
  M
  GAGAGGCAAC CCTTTCTCTC ACAGGGCTTC CTGTATGAAG GTTAAACTAT AAAATCATCA
  CGCTGAGCCT CCTCTTTCAA TTCCATTACC ATTCCTTAAT CCCACCCATA TAGTTACAGA
  CAGACAAAGA TCACCTGGAA AGCAGCAAAG AGGCTTCCCT GGAAATCTGA GAGATGTGAG
  CCTGGTGATG CTCAATCTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38194205	NES09608377	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28059971					SNP	C	C	C	C	C	A	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38194205	NES09608377	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76354548 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594098	regulatory region 594098			within coordinates
Tssr42160	transcription start site region 42160			515 bp upstream
Tssr42161	transcription start site region 42161			433 bp upstream