rs28054693 SNP Detail

Summary

• ID
  rs28054693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73361328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGCTGAA TACCAGCAAC
  AATTGAGCAG CAGCTGTCCC ACTTCAGCTG TTCAGCAGAG GTATTGCCTC TGCTTCTTGA
  TGGGACACCC AATATGAAAA ATTGTTTCCT GTTCCTGGTG TTAGAGTAAC AATAAAGAGC
  CATTAAAGGG AAGCTCCTGG TCAAGAGAAC AGGCTTTCTC ATGAGGGTGA AGACTTTCAC
  R
  TTCTAATTGG GCCTAATCAA GCATCTGGCC AAGGCACTGG TCCTGAGCAG GTTGACTCAC
  TTACAGGCAC TGATGGGCAG AATAATCATT CCTGTAATGA TTATTAATGT CCCTTTTTTC
  CTCCCCCAGA ACTTAAGCAT GCCCTTTCTA GTACTTTGAT GTTTCTTTCA CTAAAGCTCA
  ATTCCCTGCT AAGTGGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38188017	NES09621984	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28054693					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38188017	NES09621984	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73361328 () rs orientation: forward

Symbol	Name	Function Class
Rr593992	regulatory region 593992	1835 bp proximal
Rr593993	regulatory region 593993	1902 bp proximal