rs28054691 SNP Detail

Summary

• ID
  rs28054691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73361547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATCTGG CCAAGGCACT
  GGTCCTGAGC AGGTTGACTC ACTTACAGGC ACTGATGGGC AGAATAATCA TTCCTGTAAT
  GATTATTAAT GTCCCTTTTT TCCTCCCCCA GAACTTAAGC ATGCCCTTTC TAGTACTTTG
  ATGTTTCTTT CACTAAAGCT CAATTCCCTG CTAAGTGGCT GCCTAGTGCT GTGGAGTGGA
  Y
  TTTCCCTGCT AGGTAATTAG AATGACAAAA GCTTTTCCCT TCTCTCTTTC TCCAGGTAGT
  TGCTGAGATG TATAAATTGC TTGCCCAAAG ATGTTTCTTT TAAAATTTAA TAATATTCTC
  TCCGAACTTC CATTGGTGCT CATTCTTATA TTCTCTTATT ATTAATATGT CACATTATTT
  AAGAATTAAG CAAATTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38188015	NES09621986	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28054691					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38188015	NES09621986	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73361547 () rs orientation: forward

Symbol	Name	Function Class
Rr593992	regulatory region 593992	1616 bp proximal
Rr593993	regulatory region 593993	1683 bp proximal