rs28054689 SNP Detail

Summary

• ID
  rs28054689
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73362034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGATCCCA AATCTGTGTC
  TGGTCCTGAA ATATGTTCCT ATACATGGAA GTCTCAGTTA GTCAAAGATG GGTTCTTTAA
  ATAATATGGT CAAGTTAATT AACGACTTTA GTAGTCATCC TTGCAAAGAA TGTGAAAAGA
  TTCTCAATGT TCTTAGTCAG TAGATAAAAA TTTACACAAA AAATTTAATG TAGAATTAAG
  W
  AAGGATAGAT AGAGTTAAAT AGCATCAACA AAGGCTGATC TCATAGTGAA GAATTTGAGT
  CTAGAGGTAG ATAGACTATA TTTGCAACTT CAGTCGTATT TTATATCACT TGCATAGCTA
  TAATTCACAT TCTCAGTCAC TTTCATTTTG GTTTTGGTTA TATTAGTATT AGTATTAGTA
  TTAGTATTAT TTCGTTGTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	WSB/EiJ
ss38188013	NES09621988	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	WSB/EiJ
rs28054689					SNP	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38188013	NES09621988	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73362034 () rs orientation: forward

Symbol	Name	Function Class
Rr593992	regulatory region 593992	1129 bp proximal
Rr593993	regulatory region 593993	1196 bp proximal