rs28054447 SNP Detail

Summary

• ID
  rs28054447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:61479899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATAAA GCATTTCCCT
  TTTAAACTTA TTTGTCTAAG TAAGCTTACA GTTGTAGCTT CTTTTGCAAA GTAATTAAGT
  ATATATGCTG TGAGGGTTTT TAAGTGTAAA ACAGCATGAC TGAGAACAAG ATGCTAAGCT
  TCCAGAGGAA GACCCAGCAG AAGACAGAGC AGTTCCGTTG CAGCCTGTAC ACTGTGCTCA
  R
  TTCACCTGCA GGGGCCTGCT GTTATCCTCA GGGAAGACGA TAGCAAACAC AAAAATACCA
  GTTGTCCTCA GTTGTTAGAA AAGCCAATAG AAAAAATAAT AACCCTCTGA TTAAAGCTGG
  TTCAACACTT TTTTCAATGA TTTGAATGTG ACTATTTGCC TTTTGTATCT GTTTTCCTGC
  AGACACACAG TGTTCTGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38157372	NES09321345	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28054447					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38157372	NES09321345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:61479899 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tank	TRAF family member-associated Nf-kappa B activator			Intron
				Noncoding-Transcript-Variant
Tssr17922	transcription start site region 17922			274 bp upstream
Tssr17923	transcription start site region 17923			408 bp upstream
Tssr17924	transcription start site region 17924			531 bp upstream