rs28049898 SNP Detail

Summary

• ID
  rs28049898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76096594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGAAGAC TTTGTAAATA
  CATTAAGACA AACCTAGAAA GGTAAAGAGC AAGTTAATAA CTAGAAACCT GATGGACAGT
  ACGCATTGAA CACAGAAGTA TAATCACCCA GATGGTATTG TTACTATTAT CAGTGATGAG
  ATACTTTGAA CAGTGCATTA TAAAAGCATA CTGGAAAGAA GAGAGACGCA TGTTAGAGTA
  Y
  ATTCTGCATA CAAAGGAAGC AAACTCTCGA TTAGACACTC TTGCTACCAT AATGCTGATA
  AGAAGAGGGT AGTGAAAAAT TAAACATTAT TAATTAATAC TGTCTTTTTT CTTTGCTTCT
  GGAGCAAGGT CTTATTCCAT GTCTCAGGGT GACCTTGACA CATGGTAATC CTCCTGTCTC
  AGCCTCATAA GTGCTCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38196025	NES09594335	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049898					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38196025	NES09594335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76096594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594074	regulatory region 594074			1292 bp proximal