rs28049897 SNP Detail

Summary

• ID
  rs28049897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76096623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTAGAA AGGTAAAGAG
  CAAGTTAATA ACTAGAAACC TGATGGACAG TACGCATTGA ACACAGAAGT ATAATCACCC
  AGATGGTATT GTTACTATTA TCAGTGATGA GATACTTTGA ACAGTGCATT ATAAAAGCAT
  ACTGGAAAGA AGAGAGACGC ATGTTAGAGT ATATTCTGCA TACAAAGGAA GCAAACTCTC
  R
  ATTAGACACT CTTGCTACCA TAATGCTGAT AAGAAGAGGG TAGTGAAAAA TTAAACATTA
  TTAATTAATA CTGTCTTTTT TCTTTGCTTC TGGAGCAAGG TCTTATTCCA TGTCTCAGGG
  TGACCTTGAC ACATGGTAAT CCTCCTGTCT CAGCCTCATA AGTGCTCAAA TTATAGGTGA
  GAGCCAACAG ATACTGTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38196024	NES09594336	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049897					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38196024	NES09594336	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76096623 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594074	regulatory region 594074			1263 bp proximal