rs28044833 SNP Detail

Summary

• ID
  rs28044833
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:85112933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAACCT CATTATCATG
  CCTGGGCCAG GCAGTGTTTT TGCAAAAAAC TTTACTGCAT ATGTACACAT TGGTTGTTTG
  TCCAATCTTA TGCATGGTGG CCAGCAGTAG TCAGTGCCAC TCAGCAACGG CACATGTGGC
  TTCCCACAAA TCTTCCAGCA TTTCTTCCCA TAACTAATAC ATGATATGTT CTTTTCCAGT
  Y
  TCCTCTGTGT AGATTGCTTT TTACATGCAG CTACTTCGAA CAGTTTTAAA TTTTTAATCA
  TTCCAGAATT ATTTTTAGGA TGCATGGGAG ATGGAAGGAG TTTAGTGCAA TCAGAGTTCT
  CAGGTAGAAT TACTCCCATG GGCCAGTCTG TCCTGGTCTC TTTTATAGTG GATGATTCTG
  ACAAAGTCCC ATCAAATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38171057	NES09241571	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	T	C	T		C
ss320372998	CHEV_2_85122746	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28044833					SNP	C	C	C	C	C	C	C	C	C	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38171057	NES09241571	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85112933 () rs orientation: forward

Symbol	Name	Function Class
Rr560461	regulatory region 560461	1118 bp distal
Rr560462	regulatory region 560462	1119 bp proximal
Rr560463	regulatory region 560463	1209 bp proximal
Rr560464	regulatory region 560464	1380 bp proximal