rs28044831 SNP Detail

Summary

• ID
  rs28044831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:85113454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTACAC TTCTGTACTT
  CACATGGTCA GTCAGAGACG GGAGCGAGAG TATGGTTTTG ATCACTTTGG AAGCTTCTGT
  CTAAATCAGT GCAAGGGGAA TGAGTTTGAG ATGTGTTATG CAAGGTAGGA TTCTTTTTTG
  GAGATTCTCT GGCTAGTGTA CAAGGAGGTC TAGAAATATC TGAGGAAACC TTTTTGGTAA
  R
  CTTTTTTCAT TGCACAGGTA TACATGCTTG TGGTAATGGG GTCAACGGCT GTAACTTTCC
  AGGATTTACC AGAGGCCCTC AGTAAACTTT TAGAGCTATG TCTGATCTAC CATTTCTCTA
  GGCTTGTCTG AAGTGGCCCT CTGAAGGCTG TGAGAAGAAG CCCTGGTCCT CTCTGTACTT
  TACCTTCTCT ATTGGTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38171055	NES09241573	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		G	A	A		A
ss320372999	CHEV_2_85123267	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28044831					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38171055	NES09241573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85113454 () rs orientation: forward

Symbol	Name	Function Class
Rr560461	regulatory region 560461	1639 bp distal
Rr560462	regulatory region 560462	598 bp proximal
Rr560463	regulatory region 560463	688 bp proximal
Rr560464	regulatory region 560464	859 bp proximal
Rr560465	regulatory region 560465	1486 bp proximal