rs28044830 SNP Detail

Summary

• ID
  rs28044830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:85113456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTGAGAT GTGTTATGCA AGGTAGGATT CTTTTTTGGA
  GATTCTCTGG CTAGTGTACA AGGAGGTCTA GAAATATCTG AGGAAACCTT TTTGGTAAAC
  Y
  TTTTTCATTG CACAGGTATA CATGCTTGTG GTAATGGGGT CAACGGCTGT AACTTTCCAG
  GATTTACCAG AGGCCCTCAG TAAACTTTTA GAGCTATGTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38171054	NES09241574	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28044830					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38171054	NES09241574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85113456 () rs orientation: forward

Symbol	Name	Function Class
Rr560461	regulatory region 560461	1641 bp distal
Rr560462	regulatory region 560462	596 bp proximal
Rr560463	regulatory region 560463	686 bp proximal
Rr560464	regulatory region 560464	857 bp proximal
Rr560465	regulatory region 560465	1484 bp proximal