rs28044829 SNP Detail

Summary

• ID
  rs28044829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:85113545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGGAAT GAGTTTGAGA
  TGTGTTATGC AAGGTAGGAT TCTTTTTTGG AGATTCTCTG GCTAGTGTAC AAGGAGGTCT
  AGAAATATCT GAGGAAACCT TTTTGGTAAA CTTTTTTCAT TGCACAGGTA TACATGCTTG
  TGGTAATGGG GTCAACGGCT GTAACTTTCC AGGATTTACC AGAGGCCCTC AGTAAACTTT
  Y
  AGAGCTATGT CTGATCTACC ATTTCTCTAG GCTTGTCTGA AGTGGCCCTC TGAAGGCTGT
  GAGAAGAAGC CCTGGTCCTC TCTGTACTTT ACCTTCTCTA TTGGTCAGCA CAGGTCCGAA
  AACCTCTTTC TAGTTTTCCT CTCCCTGTGT AGTCTTGGGT ACATAACATA TGCCCTGTAA
  CTCTATTCTC TTTTTCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38171053	NES09241575	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		C	C	T	C		T
ss320373000	CHEV_2_85123358	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28044829					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38171053	NES09241575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85113545 () rs orientation: forward

Symbol	Name	Function Class
Rr560461	regulatory region 560461	1730 bp distal
Rr560462	regulatory region 560462	507 bp proximal
Rr560463	regulatory region 560463	597 bp proximal
Rr560464	regulatory region 560464	768 bp proximal
Rr560465	regulatory region 560465	1395 bp proximal