rs28043294 SNP Detail

Summary

• ID
  rs28043294
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84199091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGTAAA AAAATATGAT
  GAGAGAGATG ATCAGAGATG CAATAGATAA TCCATGTCCA ATTATAGTTA GGTAGAACAG
  ATTCAGGGCT GTCTATAATT GTGTGGTAAG AAAAAAAAAT GGAATGAACC CTGTATCTAA
  AAATCTACAT ATATATTAGA TAAAATTCAA ATTAATAGAT TCTACTTTTA AAAGCACATG
  K
  AGAGAGATTT ACAAACACTT GCTTGAAAAC CAATAAATAT TTTAAAATAT GTAGATGAAA
  AATATCTACA CAAATTTGCT AAATGTTATT AAAAACTTAT AAGCCACATA TTCTCTTATT
  TAAGGAATTA GAAGTCACAT TGAATCTTTA AGATAATGCA TTTATTGATC TAGTTTATAC
  TGTATAGCAT TATATATTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38174021	NES09233473	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28043294					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38174021	NES09233473	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84199091 () rs orientation: forward

Symbol	Name	Function Class
Calcrl	calcitonin receptor-like	Intron
Rr560240	regulatory region 560240	1681 bp distal
Rr560241	regulatory region 560241	543 bp proximal