rs28043293 SNP Detail

Summary

• ID
  rs28043293
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84199347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAATAT CTACACAAAT
  TTGCTAAATG TTATTAAAAA CTTATAAGCC ACATATTCTC TTATTTAAGG AATTAGAAGT
  CACATTGAAT CTTTAAGATA ATGCATTTAT TGATCTAGTT TATACTGTAT AGCATTATAT
  ATTCAAAATC GAATAATACT CAGTGGTTTA GTTTACTCAA AATTAAATAC CTGATAAGGC
  Y
  TTCTTTACCT ATTGAGGTTT TGCTATTTCT TTTCACAAAT TTGAGGCTCA GAGACAGATC
  TTGATATGGA AATTTAAAAG ATCCTTTGAT CTATATAATG TATTTTAACA TTCAATTAGT
  TTTTGCTTTC TTTCTTTCTT TTTCTATTTT CTTTTAACAT ACCATTTATA GAGATTTTGT
  TTAATTGGTT GTTTGCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38174020	NES09233474	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28043293					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38174020	NES09233474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84199347 () rs orientation: forward

Symbol	Name	Function Class
Calcrl	calcitonin receptor-like	Intron
Rr560240	regulatory region 560240	1937 bp distal
Rr560241	regulatory region 560241	287 bp proximal