rs28043287 SNP Detail

Summary

• ID
  rs28043287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84200068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA ACTGCAAATA
  CATAAAAATA TCGCAATCAC GCTTTCCTCT GTGACCGTTG TCCTTAGCCA TGGCTTTAAG
  TTTCAACACA GGAACAAGAG TGAGAGTGTC CTGCACAGCC AGTTAGACTG AGGAGCAGGG
  GGAGGTTTAA ATCCCACTGA GCATATCCTG TTCGCCTAAG AACAATTTTT GAGGTAATTC
  Y
  AGAATTTCAC TAGAAATGAG AGTTTTCCCT TATATTACAC TTTTAAGATA TATTTTCTTT
  GGAAAATCAG AATCCACCCT GATTCTGAGG CATTGACTTA TAAATGCACA GTTATCTAAC
  AGGGTTACTT TCCTAGTGTA ATGACAGCAT TAATAGCAGT TTTTCCACAG GTTCTTTTTC
  ATTATTCTTC TCAAATGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38174013	NES09233436	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28043287					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38174013	NES09233436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84200068 () rs orientation: forward

Symbol	Name	Function Class
Calcrl	calcitonin receptor-like	Intron
Rr560241	regulatory region 560241	87 bp distal