rs28043286 SNP Detail

Summary

• ID
  rs28043286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84200174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCACTAGAA ATGAGAGTTT TCCCTTATAT TACACTTTTA
  AGATATATTT TCTTTGGAAA ATCAGAATCC ACCCTGATTC TGAGGCATTG ACTTATAAAT
  R
  CACAGTTATC TAACAGGGTT ACTTTCCTAG TGTAATGACA GCATTAATAG CAGTTTTTCC
  ACAGGTTCTT TTTCATTATT CTTCTCAAAT GATATTAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38174012	NES09233437	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		G	A	G	G		A	G	A	A		G
ss45326222	mCV27588973	ABI	CRAMUS_MOUSE	f	SNP		A					G
ss146829672	ENSMUSSNP3403337	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320371139	CHEV_2_84209987	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28043286					SNP	G	A	A	A	G	A	G	G	A	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38174012	NES09233437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84200174 () rs orientation: forward

Symbol	Name	Function Class
Calcrl	calcitonin receptor-like	Intron
Rr560241	regulatory region 560241	193 bp distal