rs28043283 SNP Detail

Summary

• ID
  rs28043283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84200880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCAGTACT GCATTGATTC CGTCCCTGCT GCAACGTCAT
  TCCAGCATAG CCATCCGTCC CAGGTCCTAT TGCAGTAAAG GCCTGAGAGA GGAAATAAAA
  R
  TGAAGGGTCA GCAAGTCTCT GTGGCTACTC ATGAGTCAAC TTTTTTGTTG TTGTTGTTTT
  GTTTTGTTTT TTGTTTTTTG AGACAGGTTT TCTCTGTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38174009	NES09233440	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		A	G	A	A		A	G		A
ss45265750	mCV27588947	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss146829681	ENSMUSSNP6135087	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss320371141	CHEV_2_84210693	CHEVERUD	SCREENING_POP	f	SNP													A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28043283					SNP	A	A	G	G	G	A	G	A	A	G	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38174009	NES09233440	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84200880 () rs orientation: forward

Symbol	Name	Function Class
Calcrl	calcitonin receptor-like	Intron
Rr560241	regulatory region 560241	899 bp distal