rs28039506 SNP Detail

Summary

• ID
  rs28039506
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62448180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG GTTCCTATCG CTAATGCACA
  S
  GGCATCTCAG GTCTTTGCTC TGTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38155128	NES09302799	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	C	G	C	C	C	G	G	C	G	G	G
ss146703060	ENSMUSSNP3319520	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28039506					SNP	G	G	G	G	G	C	G	C	C	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155128	NES09302799	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62448180 () rs orientation: forward

Symbol	Name	Function Class
Ifih1	interferon induced with helicase C domain 1	Intron
Rr557887	regulatory region 557887	within coordinates
Rr557888	regulatory region 557888	420 bp proximal
Rr557889	regulatory region 557889	1910 bp proximal
Tssr24302	transcription start site region 24302	572 bp upstream
Tssr24303	transcription start site region 24303	545 bp upstream
Tssr24304	transcription start site region 24304	489 bp upstream
Tssr24305	transcription start site region 24305	475 bp upstream