rs28039505 SNP Detail

Summary

• ID
  rs28039505
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62448879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAT TTAGGGAACA GGAAAGCGCT
  W
  CCTATACCGG CCTTTACTTA GTAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38155127	NES09302693	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	T	A	T	T	T	T		T	T	A	T		A
ss146703068	ENSMUSSNP5815743	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
ss320320701	CHEV_2_62456592	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28039505					SNP	A	A	T	A	A	T	A	T	T	T	T	T	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155127	NES09302693	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62448879 () rs orientation: forward

Symbol	Name	Function Class
Gm39839	predicted gene, 39839	1303 bp upstream
Ifih1	interferon induced with helicase C domain 1	Intron
Rr557887	regulatory region 557887	423 bp distal
Rr557888	regulatory region 557888	within coordinates
Rr557889	regulatory region 557889	1211 bp proximal
Tssr24302	transcription start site region 24302	1271 bp upstream
Tssr24303	transcription start site region 24303	1244 bp upstream
Tssr24304	transcription start site region 24304	1188 bp upstream
Tssr24305	transcription start site region 24305	1174 bp upstream