rs28039491 SNP Detail

Summary

• ID
  rs28039491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62452490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATCAGTG GCATACAGTA GAAGTGGTAT TAAATTTAAC
  TATTTCGCAA CAAAGACAGA ATGTCACATT TAATCCACAC CCAGAACTTA ACACTGACCG
  Y
  ACTGAACAGA AAAAAAAAAA ACCTGACTTC TACCCCCCCC CCCTTTTTTT AAATGACAAA
  GTCATGACTG ACATTTGGTG AACTGGCTTT CCTCACACTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38155113	NES09302621	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28039491					SNP	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155113	NES09302621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62452490 () rs orientation: forward

Symbol	Name	Function Class
Gm39839	predicted gene, 39839	within coordinates
Ifih1	interferon induced with helicase C domain 1	Intron
Rr557889	regulatory region 557889	1814 bp distal
Tssr24306	transcription start site region 24306	5 bp downstream