rs28037264 SNP Detail

Summary

• ID
  rs28037264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:75944675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCCTCCTCC TGAGGCGTTT GTCCTTTTTC CAGCTCCTTA
  TGTGCCACTT GACACACGTA CATGGAACTA GAAGCTGGAG TCTCAGCAAA ATATATACTA
  Y
  CACCAAACCT TAAGAAATAG ATGTGCAAAG ACAAAGAGAG TCTGCCATCA AAATATGCCA
  GAATTTGTAT CACTGGAGTT AAATCTCTAA TCTTTTCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38196997	NES09601726	PERLEGEN	MM_PANEL2	f	SNP	C		C		C	C			C	C	T	T	C	T			T
ss45584829	mCV24419460	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T
ss47700776	NES10225856	PERLEGEN	MM_PANEL2	r	SNP	G		G	A	G	G	A		G	G	A	A	G	A	G	G	A
ss146576106	ENSMUSSNP2389392	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28037264					SNP	C	C	C	T	C	C	T	T	C	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38196997	NES09601726	PERLEGEN	MM_PANEL	f	SNP	C/T
ss47700776	NES10225856	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:75944675 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594066	regulatory region 594066			1777 bp distal
Rr594067	regulatory region 594067			101 bp distal