rs28036462 SNP Detail

Summary

• ID
  rs28036462
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76289219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAAACTAC CATCAGAAAC ACAGCAAAAG CACACAGAAC
  CCCAAAACTC TCCAGTCATT TTGGAAAGAA AACCAGGCAA GTTTCTAGGC ATACGAGAAA
  S
  AAAACAAAAG CTATTACCCT TTTCCTGAAT ACCATGTTCT TTTAAGACTA TATAAGTCAC
  CTTTAATTGT TAAAAATGGG TCACAAACAC CAGAGTTTGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38194786	NES09611617	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28036462					SNP	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38194786	NES09611617	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76289219 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr376702	regulatory region 376702			32 bp downstream
Rr594092	regulatory region 594092			103 bp distal
Rr594093	regulatory region 594093			741 bp proximal