rs28036461 SNP Detail

Summary

• ID
  rs28036461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76289458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAAGAC TATATAAGTC
  ACCTTTAATT GTTAAAAATG GGTCACAAAC ACCAGAGTTT GAGAAGGCAT TTAACTTAGT
  GGTGTGTGTG TATGTACGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGATTT GATTTTGGCT TTGTTAGTCA ACATAGAGAA TGTTACAGGA
  Y
  CACCTAAAAC AAATAATGAA GCTGAACATT GTGGTCATTT CCACCTTTAC ATGTGCTAGA
  AAATAATTTG CTTTTGAGAT GTGTCCCAGA ATCAAAATAC AGAAAGGGTT GGAATTACAT
  GCTTGAAGAT GCATGGGAAT AAATATGAAT GTCTTTTTAT GAAGAACTAT GAAGTGATTC
  TTGATGCCCA AGTCTATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss38194785	NES09611475	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs28036461					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38194785	NES09611475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76289458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr376702	regulatory region 376702			271 bp downstream
Rr594092	regulatory region 594092			342 bp distal
Rr594093	regulatory region 594093			502 bp proximal