rs28036458 SNP Detail

Summary

• ID
  rs28036458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76289650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGGATC ACCTAAAACA
  AATAATGAAG CTGAACATTG TGGTCATTTC CACCTTTACA TGTGCTAGAA AATAATTTGC
  TTTTGAGATG TGTCCCAGAA TCAAAATACA GAAAGGGTTG GAATTACATG CTTGAAGATG
  CATGGGAATA AATATGAATG TCTTTTTATG AAGAACTATG AAGTGATTCT TGATGCCCAA
  R
  TCTATTATCT GTCCTGAGAT TCTTATGCCT CAAAATGACA CAAGCTTGGT TCCCAGTACT
  TAATGGCAGG TAGTTCATAG CCACCTGTAA CTTCAAAGGA TCCAAAGTAT TCTTTTGGGC
  TCATTAGGCA CCTACACTCA CATACACATA ACTACATACA GGCATACATA GTTTTAAAAT
  AACAAAATAT GGGACTAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38194782	NES09611478	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28036458					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38194782	NES09611478	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76289650 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr376702	regulatory region 376702			463 bp downstream
Rr594092	regulatory region 594092			534 bp distal
Rr594093	regulatory region 594093			310 bp proximal