rs28034561 SNP Detail

Summary

• ID
  rs28034561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79526799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGCTGT GTGTGTGTGT
  GTGTGAATAT ATATGCCATG TGTATATAAA TTATATGTAA TAAGAAAGAG CTCAGCAGAA
  CAAAATTTTT GATGTATAAT AATGGAAGCT AAGTTGTAGA TAGAACCATC TTTTTTTGGA
  GGAGTTAGAA AAGAGAATTG TAGGAGAAGT TGCTATTTTG TCAAACCTGC CTTTCTCAAA
  R
  GAAGCAGTGA AGAACAACAG CGCATAATGA TGAAGACAGG AGAAGACCCT CGCCGCAACG
  CTCTGGACCT CACTTGATAC CTAGTTCAGG AACATTTGGC GGCAGCAGGG GTTGCCTAGG
  ATAAACCCTA GAGGATTGTT TAATATACAT GGGAGATTCC TTCCCTTGGA GAGTCCCTCG
  TGTGTGGGCA GGGTCTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38184987	NES09235113	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G		G	G	A	G		A
ss320361094	CHEV_2_79536612	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28034561					SNP	A	A	A	A	G	A	A	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38184987	NES09235113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79526799 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11846	CpG island 11846	247 bp distal
Rr560025	regulatory region 560025	142 bp distal
Rr560026	regulatory region 560026	1341 bp proximal
Rr560027	regulatory region 560027	1798 bp proximal