rs28034560 SNP Detail

Summary

• ID
  rs28034560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79526857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGAAAG AGCTCAGCAG
  AACAAAATTT TTGATGTATA ATAATGGAAG CTAAGTTGTA GATAGAACCA TCTTTTTTTG
  GAGGAGTTAG AAAAGAGAAT TGTAGGAGAA GTTGCTATTT TGTCAAACCT GCCTTTCTCA
  AAAGAAGCAG TGAAGAACAA CAGCGCATAA TGATGAAGAC AGGAGAAGAC CCTCGCCGCA
  R
  CGCTCTGGAC CTCACTTGAT ACCTAGTTCA GGAACATTTG GCGGCAGCAG GGGTTGCCTA
  GGATAAACCC TAGAGGATTG TTTAATATAC ATGGGAGATT CCTTCCCTTG GAGAGTCCCT
  CGTGTGTGGG CAGGGTCTGG AGAGTCAGGA AGGGGAGCAT GAGCCGTCAT CAAACAGCAA
  AGAGGGAACT CAAATAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38184986	NES09235114	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G		G	G	A	G		A
ss320361095	CHEV_2_79536670	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28034560					SNP	A	A	A	A	G	A	A	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38184986	NES09235114	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79526857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11846	CpG island 11846	305 bp distal
Rr560025	regulatory region 560025	200 bp distal
Rr560026	regulatory region 560026	1283 bp proximal
Rr560027	regulatory region 560027	1740 bp proximal