rs28034559 SNP Detail

Summary

• ID
  rs28034559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79526900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAGCTA AGTTGTAGAT
  AGAACCATCT TTTTTTGGAG GAGTTAGAAA AGAGAATTGT AGGAGAAGTT GCTATTTTGT
  CAAACCTGCC TTTCTCAAAA GAAGCAGTGA AGAACAACAG CGCATAATGA TGAAGACAGG
  AGAAGACCCT CGCCGCAACG CTCTGGACCT CACTTGATAC CTAGTTCAGG AACATTTGGC
  R
  GCAGCAGGGG TTGCCTAGGA TAAACCCTAG AGGATTGTTT AATATACATG GGAGATTCCT
  TCCCTTGGAG AGTCCCTCGT GTGTGGGCAG GGTCTGGAGA GTCAGGAAGG GGAGCATGAG
  CCGTCATCAA ACAGCAAAGA GGGAACTCAA ATAGGGAAGC ACTGCTTCCC CCTGTTCTCA
  GGACAAGATC GGACAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38184985	NES09235115	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28034559					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38184985	NES09235115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79526900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11846	CpG island 11846	348 bp distal
Rr560025	regulatory region 560025	243 bp distal
Rr560026	regulatory region 560026	1240 bp proximal
Rr560027	regulatory region 560027	1697 bp proximal