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rs28034558 SNP Detail
Summary
  • ID
    rs28034558
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:79527022 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CATAATGATG AAGACAGGAG
    AAGACCCTCG CCGCAACGCT CTGGACCTCA CTTGATACCT AGTTCAGGAA CATTTGGCGG
    CAGCAGGGGT TGCCTAGGAT AAACCCTAGA GGATTGTTTA ATATACATGG GAGATTCCTT
    CCCTTGGAGA GTCCCTCGTG TGTGGGCAGG GTCTGGAGAG TCAGGAAGGG GAGCATGAGC
    Y
    GTCATCAAAC AGCAAAGAGG GAACTCAAAT AGGGAAGCAC TGCTTCCCCC TGTTCTCAGG
    ACAAGATCGG ACAGCTTTGA AATGGGGTTG ACTTAACAAC TGACATACAA CCAGGAGGGC
    CTGCGATCCA GACCCTAAAT AAAGTTATTT GTGTGAAAAG TTTCCTCAAC TTGATCCTGC
    TCCTAAATAC CCAAGGACAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38184984 NES09235116 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28034558 SNP C C C C C C C C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38184984 NES09235116 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:79527022 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11846 CpG island 11846 470 bp distal
Rr560025 regulatory region 560025 365 bp distal
Rr560026 regulatory region 560026 1118 bp proximal
Rr560027 regulatory region 560027 1575 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory