rs28034556 SNP Detail

Summary

• ID
  rs28034556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79527223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACATACAA CCAGGAGGGC CTGCGATCCA GACCCTAAAT
  AAAGTTATTT GTGTGAAAAG TTTCCTCAAC TTGATCCTGC TCCTAAATAC CCAAGGACAG
  Y
  CTCTATTTTC AAACATGTAT ATTCACTTAG TAAGAGAGTA GAATCTATCT GATGAGATCT
  ATTCTAATGA TATTGCGTGA GGAGCATGCT CAGTGTAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38184982	NES09235118	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	C	C		C	C	C		C
ss45381283	mCV27567449	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss146787483	ENSMUSSNP223846	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss320361097	CHEV_2_79537036	CHEVERUD	SCREENING_POP	f	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28034556					SNP	C	C	T	T	T	C	T	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38184982	NES09235118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79527223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11846	CpG island 11846	671 bp distal
Rr560025	regulatory region 560025	566 bp distal
Rr560026	regulatory region 560026	917 bp proximal
Rr560027	regulatory region 560027	1374 bp proximal