rs28034555 SNP Detail

Summary

• ID
  rs28034555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79527549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACTGAAA AAGTTCAGGA
  TGAAATGAGT CATCTAAAAT ATTGGGAAAA TCCAAAGTGT TTTAGAAGCT TGAATAGAAA
  ACTGCCACCC ACATCCATAC ACACCCTAGC GTAATTTGAG AATGTTAAGG GAAAATACAC
  TGAATGTTTC TCAGGAGATC AGACCTTTCA TGACAGCTTT CTCTGAAATG AAATCAGTAG
  Y
  CCTAGATTTT ATTTAGCAGT AGAGAATTAT CAAAGTTCAA AAAACAAAAA TTCTGAAACT
  TGTAGCATTT CATTCAATCG AACTAACTCA TGTAGAAGGG CAAAAAACAT TCTAGAAATG
  CACAGGCTTA AGAGAGTTTA CTAGCCATGA GCCATTACTA AAAGCTTATG AAATGGTACA
  TTTTGGTGGA CAGACTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38184981	NES09235119	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28034555					SNP	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38184981	NES09235119	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79527549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11846	CpG island 11846	997 bp distal
Rr560025	regulatory region 560025	892 bp distal
Rr560026	regulatory region 560026	591 bp proximal
Rr560027	regulatory region 560027	1048 bp proximal