rs28034554 SNP Detail

Summary

• ID
  rs28034554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79527798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTGAAA CTTGTAGCAT
  TTCATTCAAT CGAACTAACT CATGTAGAAG GGCAAAAAAC ATTCTAGAAA TGCACAGGCT
  TAAGAGAGTT TACTAGCCAT GAGCCATTAC TAAAAGCTTA TGAAATGGTA CATTTTGGTG
  GACAGACTGA ATCCAAGACA AAGTATTCTA TTGAAACAAT AGTGGCTATG TAGAAAGAGG
  Y
  GATGTTGTCA TGACAGACGA GTAATCAGTA CAAGGACATG CTTAGCATCT TACTTTCTTG
  GGATTGGATG TAAACATCCA TGTATATCCA TCAATAACAG TAAATATTAA TAATTAGTTT
  CATGTGTATA TGTTCATATA TGTGGGTGCA CACGTGTGTG GGTACCTGTG TGTACATGTA
  TGCATAGTCA TGAAGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38184980	NES09235120	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28034554					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38184980	NES09235120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79527798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11846	CpG island 11846	1246 bp distal
Rr560025	regulatory region 560025	1141 bp distal
Rr560026	regulatory region 560026	342 bp proximal
Rr560027	regulatory region 560027	799 bp proximal