rs28028985 SNP Detail

Summary

• ID
  rs28028985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:85990804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGTAGAT GACAAGAAAC
  ACACCGAAGA GACTGACCTG AAGCTCTGAG TCATCTGTGA GCCCCACAAG GATGAACTCA
  GACACTGCAG AGTGATTGCT GTTAGCCATC GTAGATAGAT GTTACTCTCC TAAAAGTCTT
  CAGAGCATAC AATATCGACC TAAATTCAGA AGCCGATTCG GACTCATGAA TCTTGCATTG
  R
  AAATTCATAA GAAGCACTTC ACATGGCTTC AGCTTTCAAC TGGCACGTGC CATAGGTAGA
  TTTATCAAAA TATGGGACCC TGTGGGATTT GTAAAAATAT AGAGTTTTTT TTTTTCTTTT
  TTCTTTTTTC TTTGTGCTAG TTGAACAATC AAACCCATGT TAGGAGATAT TTTCCCGAGT
  CCAGTCATCT CAGGAACAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38168808	NES09241552	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28028985					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38168808	NES09241552	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85990804 () rs orientation: forward

Symbol	Name	Function Class
Or5al1	olfactory receptor family 5 subfamily AL member 1	mRNA-UTR
Or5al7	olfactory receptor family 5 subfamily AL member 7	1543 bp downstream