rs28028981 SNP Detail

Summary

• ID
  rs28028981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:85991198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAAGTTC TACCTTTCTG
  ACTGCATCAA ATGGAGTTCG TGTTCTCAGG TCTGGGAATC CAACTCCCAT CCTGTTTCTT
  CAGATGTTTC ATGGTTTTCT TTTAACCAGT AAATGTTGCA TAGAGGGAAG ATGCTCTTAT
  CCTGTTATCT AAACTAAGGC ATACAGGTCA TAAATATGTC GCTTGTCTTG ACTTAATAGA
  Y
  TATATGCAGA TTGTGCACTC CTTAGTCCCT TATCATTACA AAATTCAGGG CCAGAGTCCA
  AGAGGTGTTA TGACTAAAAA AGCTGAATCA AGGACCCTGA AATCAGATGA CCCAAGTAAG
  CCCAGTTACC AATGTTAACT TCTTTGCTTA ACCCCTTGGG TCAAAATATG ATTGGCCAAC
  GTAACAGTCC ATACCAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38168804	NES09241556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28028981					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38168804	NES09241556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85991198 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Or5al1	olfactory receptor family 5 subfamily AL member 1			Intron
				mRNA-UTR
Or5al7	olfactory receptor family 5 subfamily AL member 7			1149 bp downstream