rs28028978 SNP Detail

Summary

• ID
  rs28028978
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:85992764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCACAGG TGGAGAAGAC
  TTTCTGCCTC CCTTCCCCCG AATGCTTCTT TAGAATTGCA GACACGATGA ATAGGTAGGA
  GATGAGGACA ATGAGGAGAG AGCAGCACAC ATTGAACCCA GCCATGCTCA GCAGCAGCAG
  TTCCTTGACT TGAGTGTTTG AGCAAGCTAG AGCCATGAGA GGAATGTCTT CACAGAAGAA
  M
  TGGTTCACTA GGTTGGAGTC ACAAAAAGAC AAAATGAATG TGGTCACTGT CTGAATAAGT
  GCTGTGACAA ATGCATAAAT GTACGTGGTA ATGGCTATCT GAATGCAGAG TCTCCGCGGC
  ATGAGAATGA CATAGAGCAA AGGGTTACAG ATGGCCACAT ACCTATCATA GGCCATTACA
  GACAGCAGGA AGACTTCGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38168801	NES09241559	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28028978					SNP	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38168801	NES09241559	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85992764 () rs orientation: forward

Symbol	Name	Function Class
Or5al1	olfactory receptor family 5 subfamily AL member 1	1979 bp upstream
Or5al7	olfactory receptor family 5 subfamily AL member 7	Coding-NonSynonymous