rs28028977 SNP Detail

Summary

• ID
  rs28028977
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:85992779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTTTCT GCCTCCCTTC
  CCCCGAATGC TTCTTTAGAA TTGCAGACAC GATGAATAGG TAGGAGATGA GGACAATGAG
  GAGAGAGCAG CACACATTGA ACCCAGCCAT GCTCAGCAGC AGCAGTTCCT TGACTTGAGT
  GTTTGAGCAA GCTAGAGCCA TGAGAGGAAT GTCTTCACAG AAGAAATGGT TCACTAGGTT
  S
  GAGTCACAAA AAGACAAAAT GAATGTGGTC ACTGTCTGAA TAAGTGCTGT GACAAATGCA
  TAAATGTACG TGGTAATGGC TATCTGAATG CAGAGTCTCC GCGGCATGAG AATGACATAG
  AGCAAAGGGT TACAGATGGC CACATACCTA TCATAGGCCA TTACAGACAG CAGGAAGACT
  TCGCACACAG AAAATGTGGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38168800	NES09241560	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	G	C		G	C	G	G		G	C	C	G		G
ss45359656	mCV25235532	ABI	CRAMUS_MOUSE	f	SNP		C					G		C
ss146849945	ENSMUSSNP108117	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320376646	CHEV_2_86002592	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28028977					SNP	G	C	C	C	G	C	G	G	C	G	G	C	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38168800	NES09241560	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85992779 () rs orientation: forward

Symbol	Name	Function Class
Or5al1	olfactory receptor family 5 subfamily AL member 1	1994 bp upstream
Or5al7	olfactory receptor family 5 subfamily AL member 7	Coding-Synonymous