rs28028820 SNP Detail

Summary

• ID
  rs28028820
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84216565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAGATGCTT GTGTACAAAT GGCGCCATTG TGGAAGAAAG
  GTTCTGAGGG CATCTCAGTG GTAGAAGAGT GAGCCAGAAT GAGCAAGATC CTAGATTCAA
  W
  GTACACACAC ACTCATACAC TCTCACACAC ATACACACTC ATATACTCAC ACAGTTACAT
  GCATACACAC TCGTACACAC ACACTCATAA CTCACACAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38173946	NES09252128	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	T	T		T	A	A		T
ss146830278	ENSMUSSNP95047	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					A
ss320371265	CHEV_2_84226378	CHEVERUD	SCREENING_POP	f	SNP									T				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28028820					SNP	A	A	A	A	T	A	T	T	T	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173946	NES09252128	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84216565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			1345 bp upstream
Rr560244	regulatory region 560244			628 bp distal
Rr560245	regulatory region 560245			855 bp proximal
Rr560246	regulatory region 560246			1356 bp proximal
Rr560247	regulatory region 560247			1864 bp proximal
Tssr24971	transcription start site region 24971			968 bp downstream