rs28028817 SNP Detail

Summary

• ID
  rs28028817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84217675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGTCACG CTTGACAGGT TTAATAGGCC TTAACATCAT
  TGAAATGTTT CCTAACTTCA CAGCCTCCTG GCTCTTTCTG GGAATCTTCC CATAGTGTGT
  Y
  CTACCCAAAA CAAAACCTAT CCGGAAGAAA CAAACGCAGC ACTTCCCAAC GCCCCACCCC
  CACCCCCTTT CAACCCAGGC ATCCAGGGAA AAGTCTGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38173943	NES09252077	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	C		C	C	T		C
ss146830308	ENSMUSSNP7155407	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320371270	CHEV_2_84227488	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28028817					SNP	T	T	T	C	T	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173943	NES09252077	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84217675 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			235 bp upstream
Rr560244	regulatory region 560244			1738 bp distal
Rr560245	regulatory region 560245			within coordinates
Rr560246	regulatory region 560246			246 bp proximal
Rr560247	regulatory region 560247			754 bp proximal
Tssr24971	transcription start site region 24971			139 bp upstream