rs28028812 SNP Detail

Summary

• ID
  rs28028812
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84218122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATATGTACT AAGTCTCTTT TTCACTTTAT CTCTTTTTAA
  ATATCTTTTG TTGTTTCTGA AAAGCAAGAA AACACATGCA CGAACAGGCT GAATCTGTCT
  S
  GGCTGTTTCG AAAGACTGCC GCGTAGATAT CTCTCTAACT ACAATGCAGA GTTATATCAC
  CAGCTACGCG TCCGTCTGCC TTCCACACAG TTTCCTTGA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38173938	NES09252086	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G	C		G	C	G	G		C	G	C	C		G
ss45200945	mCV24735357	ABI	CRAMUS_MOUSE	f	SNP	G	C					G
ss320371277	CHEV_2_84227935	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28028812					SNP	G	C	C	C	G	C	G	G	C	G	G	G	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173938	NES09252086	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84218122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560245	regulatory region 560245			202 bp distal
Rr560246	regulatory region 560246			within coordinates
Rr560247	regulatory region 560247			307 bp proximal
Tssr24971	transcription start site region 24971			586 bp upstream
Tssr24972	transcription start site region 24972			1920 bp downstream
Tssr24973	transcription start site region 24973			1977 bp downstream