rs28028809 SNP Detail

Summary

• ID
  rs28028809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84218738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGTGTGA TCTGTGGCAT
  CTCTCCAGGC TTCTGCAGTT GTAAGACAGG AGCAGCAAGC ACGTGCATCA TGAGTACCTA
  GAGGAATCGT GGAGGGCAAC CTCCGTAATC ACCAGCTGAA AACAGTCCCT GGGAACTGTT
  GTCTGGACAG CAAGTGGTGG TCTCTCCCCG GAGCAGAACG GTATGTCCTG GCTCACTCTG
  W
  GATTGGTCAC AGTTACAAGA CTTGCAATGT CAAGTCGAAT TATGTATAAA TATATATATA
  TGGTTTTTGT TTTTTTTTTT TTTTTGGTTT TTTTTTTTTT TTTTTTTTTT TTTTTTGGTT
  TTTCAAGACA GGGTTTCTCT GTGTAGCCCC GGCTATCCTG AAACTCACAC TGTAGACCAG
  GCTGGCCTTG AACTCAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38173935	NES09252091	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28028809					SNP	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173935	NES09252091	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84218738 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560245	regulatory region 560245			818 bp distal
Rr560246	regulatory region 560246			482 bp distal
Rr560247	regulatory region 560247			2 bp distal
Tssr24971	transcription start site region 24971			1202 bp upstream
Tssr24972	transcription start site region 24972			1304 bp downstream
Tssr24973	transcription start site region 24973			1361 bp downstream
Tssr24974	transcription start site region 24974			1402 bp downstream