rs28028807 SNP Detail

Summary

• ID
  rs28028807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84219161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCCCTGAA GATAGTGGAA TGTAAGACAT TCAAGAGTAA
  ATGGAGAGGA GAGTTGTGTC TGAGTCATTT GTTTCTAATC AAATGCCTTG GCTGTGTGCG
  Y
  GTGACGCAGC TGCTTTTCCT TTTTCTTTGT CTTTTTTTTT TTTTTTTTTT TTTTTAGATA
  TTTTCTTTAT TTACATTTCA AGTGTTATCC CCTTTCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38173933	NES09252038	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	C	C		C	C	T	C		C
ss146830373	ENSMUSSNP4157880	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320371281	CHEV_2_84228974	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28028807					SNP	C	C	T	T	T	C	T	C	T	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173933	NES09252038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84219161 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560245	regulatory region 560245			1241 bp distal
Rr560246	regulatory region 560246			905 bp distal
Rr560247	regulatory region 560247			425 bp distal
Tssr24971	transcription start site region 24971			1625 bp upstream
Tssr24972	transcription start site region 24972			881 bp downstream
Tssr24973	transcription start site region 24973			938 bp downstream
Tssr24974	transcription start site region 24974			979 bp downstream
Tssr24975	transcription start site region 24975			1979 bp downstream